1. Kratochwil CF*, Sefton MS*, Liang Y and Meyer A (2017). Tol2 transposon-mediated transgenesis in the Midas cichlid (Amphilophus citrinellus) — towards understanding gene function and regulatory evolution in an ecological model system for rapid phenotypic diversification. BMC Developmental Biology 17: 15 
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2. Kratochwil CF, Maheshwari U and Rijli FM (2017). The Long Journey of Pontine Nuclei Neurons: From Rhombic lip to Cortico-Ponto-Cerebellar Circuitry. Front. Neural Circuits 11:33
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3. Renier N, Dominici C, Erzurumlu R,, Kratochwil CF, Rijli FM, Gaspar P and Chedotal A. (2017). A mutant with bilateral whisker to barrel inputs unveils somatosensory mapping rules in the cerebral cortex. eLife 6, e23494
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4. Kratochwil CF*, Geissler L*, Irisarri I* and Meyer A (2015). Molecular evolution of the neural crest regulatory network in ray-finned fish. Genome Biology and Evolution 7 (11), 3033-3046.
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5. Bechara A, Laumonnerie C, Vilain N, Kratochwil CF, Cankovic V, Maiorano NA, Kirschmann MA, Ducret S and Rijli F (2015). Hoxa2 selects barelette neuron identity and connectivity in the mouse somatosensory brainstem. Cell Reports. 13 (4), 783-797.
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6. Kratochwil CF and Meyer A (2015). Evolution: Tinkering within gene regulatory landscapes. Current Biology 25 (7) R185-R288
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7. Kratochwil CF and Meyer A (2015). Mapping active promoters by ChIP-seq profiling of H3K4me3 in cichlid fish – a first step to uncover cis-regulatory elements in ecological model teleosts. Molecular Ecology Resources. 15 (4), 761-771.
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8. Kratochwil CF*, Sefton MS* and Meyer A (2015). Embryonic and larval development in the Midas cichlid fish species flock (Amphilophus spp.): a new evo-devo model for the investigation of adaptive novelties and species differences. BMC Developmental Biology 15: 12 
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9. Kratochwil CF and Meyer A (2015). Closing the genotype–phenotype gap: Emerging technologies for evolutionary genetics in ecological model vertebrate systems. BioEssays 37 (2), 213-226. 
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10. Kratochwil CF and Rijli FM (2014): “The Cre/lox system to assess the development of the mouse brain”, Brain development: Methods and Protocols, Methods in Molecular Biology (Simon G. Sprecher ed.), Springer, New York. 1082, 295–313.
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11. Di Meglio T*, Kratochwil CF*, Vilain N, Loche A, Vitobello A, Yonehara K, Roska B, Peters AHFM, Wellik D, Ducret S and Rijli FM (2013). Ezh2 orchestrates topographic tangential migration and connectivity of precerebellar neurons. Science 339 (6116), 204–207.
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12. Minoux M, Kratochwil CF, Ducret S, Amin S, Kitazawa T, Kurihara H, Bobola N, Vilain N and Rijli FM (2013). Mouse Hoxa2 genetic analysis provides a model for microtia and auricle duplication. Development 140 (21), 4386–4397.
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13. Kastenhuber E*, Kratochwil CF*, Ryu S*, Schweitzer J and Driever W (2010). Genetic dissection of dopaminergic and noradrenergic contributions to catecholaminergic tracts in early larval zebrafish. J Comp Neurol 518 (4), 439-458.
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14. Tervonen TA*, Louhivuori V*, Sun X, Hokannen M-E, Kratochwil CF, Zebryk P, Castren E and Castren ML (2009). Aberrant differentiation of glutamatergic cells in neocortex of mouse model for fragile X syndrome. Neurobiol. Dis. 33 (2), 250-259
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​* equal contribution 

(COPYRIGHT CLAUDIUS KRATOCHWIL 2017)